♻️ Macrocyclic Peptide Engineering

Cyclic Peptide Synthesis

Custom Cyclic & Macrocyclic Peptides — From Disulfide to Click Chemistry

Boston Molecules specializes in custom cyclic peptide synthesis with multiple cyclization chemistries. From simple disulfide bridges to advanced click chemistry and RCM — we deliver research-grade macrocyclic peptides with confirmed structural characterization.

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Why Cyclic Peptides?

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Druglike Properties

Cyclic peptides occupy a unique chemical space between small molecules and biologics. Cyclization enables oral bioavailability (Cyclosporine A paradigm) and cell permeability.

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Conformational Constraint

Pre-organizing the peptide backbone reduces entropic penalty upon target binding, increasing affinity by 10–1000× compared to linear counterparts.

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Clinical Momentum

30+ cyclic peptides approved or in Phase 3. RaPID (Peptidream), bicyclic peptides (Bicycle Therapeutics), and macrocyclic PPI inhibitors are reshaping the pipeline.

Cyclization Chemistries We Offer

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Head-to-Tail (Backbone) Cyclization

N-terminus to C-terminus amide bond forming a macrocyclic ring. The gold standard for conformational constraint. Dramatically improves metabolic stability and oral bioavailability.

Example: Cyclosporine A, SFTI-1

Backbone Macrocyclic Oral Bioavailability
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Disulfide-Bridged Cyclization

Intramolecular S–S bond between two cysteine residues. The most common natural cyclization strategy. Found in hormones, toxins, and defensins.

Example: Oxytocin, Somatostatin, α-Conotoxins

Cys-Cys Native Reversible
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Lactam-Bridged Cyclization

Sidechain-to-sidechain amide bond, typically between Lys (ε-NH₂) and Asp/Glu (γ/δ-COOH). Highly stable, non-reducible alternative to disulfide bridges.

Example: MT-II, PT141 (Bremelanotide)

Lys-Asp/Glu Non-Reducible Stable

Thioether (Lanthionine) Cyclization

C–S bond between Cys thiol and dehydro-amino acid. Found in lantibiotics. Provides irreversible constraint with excellent stability in reducing environments.

Example: Nisin, Duramycin

Thioether Lanthionine Irreversible
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Click Chemistry (Triazole) Cyclization

Cu(I)-catalyzed azide-alkyne cycloaddition (CuAAC) forming a 1,2,3-triazole linkage. Biorthogonal, highly chemoselective, and tolerates diverse functional groups.

Example: Triazole-stapled peptides

CuAAC Triazole 🔥 Modern
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RCM (Ring-Closing Metathesis)

Olefin metathesis between allyl-glycine or pentenyl-alanine residues. Creates carbon–carbon crosslinks. Used in both stapled and macrocyclic peptide design.

Example: HBS α-helices, cRGD variants

Olefin Grubbs Catalyst C–C Bond

Linear vs. Cyclic Peptide Properties

Property Linear Peptide Cyclic Peptide Improvement
Protease Resistance ★☆☆☆ ★★★★ 10–1000× improvement
Target Affinity ★★☆☆ ★★★★ Pre-organized binding conformation
Selectivity ★★☆☆ ★★★★ Reduced off-target binding
Cell Permeability ★☆☆☆ ★★★☆ Passive diffusion (Rule of 5 compliant)
Oral Bioavailability ☆☆☆☆ ★★★☆ Cyclosporine A paradigm
Serum Half-life ★☆☆☆ ★★★☆ Minutes → hours

Research & Therapeutic Applications

Application Area Key Targets Approach
Oncology 🔥 Hot RAS, p53-MDM2, PD-1/PD-L1, BCL-2 PPI disruption, intracellular targets
Infectious Disease Gram-positive bacteria, HIV, HCV Antimicrobial cyclic peptides, protease inhibitors
Metabolic Disease 🔥 Hot GLP-1R, GIPR, Ghrelin receptor Orally bioavailable peptide agonists
CNS / Pain Opioid receptors, ion channels BBB-penetrant constrained peptides
Dermatology Integrins, MC1R Topically active macrocycles
Peptide Drug Discovery 🔥 Hot mRNA display, phage display libraries Cyclic peptide screening platforms (e.g., RaPID)

Our Cyclic Peptide Platform

Cyclization Methods

  • ✅ Head-to-tail backbone cyclization
  • ✅ Disulfide bridge formation (single & multiple)
  • ✅ Lactam bridge (Lys-Asp/Glu sidechain)
  • ✅ Thioether / lanthionine linkage
  • ✅ Click chemistry (CuAAC triazole)
  • ✅ Ring-closing metathesis (RCM)

QC & Characterization

  • ✅ HPLC purity analysis (>95%)
  • ✅ LC-MS / MALDI-TOF mass confirmation
  • ✅ Ellman's test (free thiol confirmation)
  • ✅ CD spectroscopy (helicity, if applicable)
  • ✅ Scale: mg to multi-gram
  • ✅ GMP-compatible process development

Custom Peptide Synthesis Quote

Design your custom peptide and get an instant quote with our online configurator.

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For research use only. Not for diagnostic or therapeutic use.